1.Wu YP (吴永平), Jin YL, Pan W, Ye CJ, Sun XY, Sun YT, Hu BL, Zhou JY*. Comparative proteomics analysis of host cells infected with Brucella abortus A19. Electrophoresis, 2014, 35(8):1130-43. (SCI，IF2013=3.26).
2.He J, Hsieh C, Wu Y (吴永平), Schmelzer T, Wang P, Lin Y, Marko M, Sui H. Cryo-FIB specimen preparation for use in a cartridge-type cryo-TEM. Journal of Structural Biology，Journal of Structural Biology. 2017, Aug;199(2):114-119.(SCI，IF2017=2.77).
3.Yuanquan Yang, Jingxin Qiu, Abigail Snyder-Keller, Yongping Wu(吴永平), Shufeng Sun, Haixin Sui,Amy B. Dean,Laura Kramer,Francisco Hernandez-Ilizaliturri. Fatal Cache Valley virus meningoencephalitis associated with rituximab maintenance therapy. New England Journal of Medicine, 2017, underreview.
4.吴永平， 尹伟， 邵春艳， 张小东。布鲁氏杆菌免疫蛋白质组学的研究进展。《中国动物传染病学报》, 2013 (5) :82-86。
5.Wu YP(吴永平), Caie Peng, Li Xu, Xiaojuan Zheng, Min Liao, Yan Yan, Yulan Jin, Jiyong Zhou*. 2012. Proteome dynamics in primary target organ of infectious bursal disease virus. Proteomics, 2012,12: 1844–1859, (SCI，IF2012=4.815).
6.Zhang JY, Wu XP, Zan J, Wu YP (吴永平), Ye CJ, Ruan XZ, Zhou JY*. Cellular Chaperonin CCT gamma Contributes to Rabies Virus Replication during Infection. Journal of Virology. 2012, 13(87): 7608-7621, (SCI，IF2012=5.076).
7.Wu YP（吴永平）, Zhou JY, Zhang X, Zheng XJ, Jiang XT, Shi LX, Yin W, Wang JH. 2009. Optimized sample preparation for two-dimensional gel electrophoresis of soluble proteins from poultry immune organs. Proteome Science, 7:38. 1-9 (SCI，IF2009=2.54).
8.Wu YP（吴永平）, Hong LL, Ye JX, Huang ZY, Zhou JY. 2009. The VP5 protein of infectious bursal disease virus is a cell surface marker and promotes virion release. Archives of Virology, 154(12):1873-1882 (SCI, IF2009=2.02).
9.Zhang X, Zhou JY, Wu YP（吴永平）, Zheng XJ, Ma GP, Wang ZT, Jin YL, He JL, Yan Y. 2009. Differential Proteome Analysis of Host Cells Infected with Porcine Circovirus Type 2. Journal of Proteomics Research, 8(11):5111-5119. (SCI，IF2009=5.68).
10.Wang YZ, Wu XP, Li HB, Wu YP（吴永平）, Shi LX, Zheng XJ, Luo M, Yan Y, Zhou JY. 2009. Antibody to VP4 protein is an indicator discriminating pathogenic and nonpathogenic IBDV infection. Molecular Immunology, 46(10):1964-9 (SCI，IF2009=3.56).
11.Shi LX, Li HB, Ma GP, Zhou JY, Hong LL, Zheng XJ, Wu YP（吴永平）, Wang YZ, Yan Y. 2009. Competitive replication of different genotypes of infectious bursal disease virus on chicken embryo fibroblasts. Virus genes, 39(1):46-52 (SCI，IF2009=1.38).
12.Wang SY, Teng QY, Jia L, Sun XY, Wu YP* (吴永平), Zhou JY*. Infectious bursal disease virus influences the transcription of chicken γc and γc family cytokines during Infection. PLOS ONE, 2014, 9(1): 1-8, (SCI，IF2013=3.73).
13.徐彩煌，张兴，张小东，吴永平*，人丙肝病毒的结构生物学研究进展[J]。电子显微学报，2023，1（42）：104-112。
14.王婧芬，华孝挺，张小东，吴航军，张兴*，俞云松*，吴永平*，单颗粒冷冻电镜技术在核糖体抗生素耐药机理研究中的应用，电子显微学报，2019，38（5）：550-555。
15.苗苗，徐彩煌，黄子惠，张小东，张兴*，吴永平*，传染性法氏囊病病毒结构的冷冻电镜初步分析，浙江大学学报(农业与生命科学版)，2019，45(4):506-511。